Protein Info for KEDOAH_26950 in Escherichia coli ECRC99

Name: rhsA
Annotation: RHS element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1386 PF20148: DUF6531" amino acids 35 to 112 (78 residues), 65.5 bits, see alignment 7e-22 PF05593: RHS_repeat" amino acids 354 to 385 (32 residues), 24.7 bits, see alignment (E = 3.8e-09) amino acids 402 to 433 (32 residues), 28.9 bits, see alignment (E = 1.8e-10) amino acids 443 to 475 (33 residues), 24 bits, see alignment (E = 6.1e-09) amino acids 527 to 561 (35 residues), 33.5 bits, see alignment (E = 6.3e-12) amino acids 568 to 604 (37 residues), 43.2 bits, see alignment (E = 6e-15) amino acids 610 to 645 (36 residues), 23.4 bits, see alignment (E = 9.3e-09) amino acids 630 to 667 (38 residues), 31.8 bits, see alignment (E = 2.3e-11) TIGR01643: YD repeat (two copies)" amino acids 402 to 437 (36 residues), 24.4 bits, see alignment (E = 3e-09) amino acids 444 to 476 (33 residues), 16.6 bits, see alignment (E = 8.6e-07) amino acids 529 to 564 (36 residues), 22.3 bits, see alignment (E = 1.4e-08) amino acids 568 to 608 (41 residues), 43.2 bits, see alignment (E = 3.5e-15) amino acids 589 to 620 (32 residues), 24.7 bits, see alignment (E = 2.4e-09) amino acids 630 to 671 (42 residues), 28.4 bits, see alignment (E = 1.7e-10) PF03527: RHS" amino acids 1138 to 1174 (37 residues), 59.8 bits, see alignment (E = 2.6e-20) TIGR03696: RHS repeat-associated core domain" amino acids 1165 to 1242 (78 residues), 79.2 bits, see alignment 2.5e-26

Best Hits

Swiss-Prot: 94% identical to RHSD_ECOLI: Protein RhsD (rhsD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 93% identity to ecw:EcE24377A_1639)

Predicted SEED Role

"core protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1386 amino acids)

>KEDOAH_26950 RHS element protein (Escherichia coli ECRC99)
MTQYGGPIVQGSAGVRIGAPTGVACSVCPGGMTSGNPVNPLLGAKVLPGETDLALPGPLP
FILSRTYSSYRTRTPAPVGIFGPGWKAPSDIRLQLRDDALVLNDNGGRSIHFEPLLPGEA
VYSRSESMWLVRGGKAAQPDGHTLARLWGALPPDIRLSPHLYLATNSAQGPWWILGWSER
VPGAEDVLPAPLPPYRVLTGLADRFGRTLTYRREAAGDLAGEITGVTDGAGREFRLVLTT
QAQRAEEARTSSLSSSDSSRPLSASPFPDTLPGTEYGPDRGIRLSAVWLMHDPAYPESLP
GAPLARYTYTEAGELLAVYDRSNTQVRAFTYDAQHPGRMVAHRYAGRPEMRYRYDDTGRV
VEQLNPAGLSYRYQYEQDRITVTDSLNRREVLHTEGGAGLKRVVKKELADGSVTHSGYDA
AGRLTAQTDAAGRRTEYGLNVVSGDITDITTPDGRETKFYYNDGNQLTAVVSPDGLESRR
AYDEPGRLVSETSRCGDVIRYAYDNPHSELPATTTDATGSTRQMTWSRYGQLLAFTDCSG
YQTRYEYDRFGQMTAVHREEGISRYRRYDNRGRLTSVKDAQGHETRYEYNAAGDLTAVIT
PDGNRSETQYDAWGKAVSTTQGGLTRSMEYDLAGRITTLTNENGSRSEFTYDALDRLVQQ
RGFDGRTQRYHYDLTGKLTQSEDEGLVTLWHYDESDRLTHRTVNGEPAEQWQYDEHGWLT
EISHLSEGHQVAVHYGYDDKGRLAGERQTVHNPETGELLWQHETEHAYNEQGLANRVTPD
SLPRVEWLTYGSGYLAGMKLGGTPLVEFTRDRLHRETVRSFGNNAYELTSTYTPAGHLQS
QRLNSQVYDRDYDWNDNGDLVRISGPRQTREYGYSATGRLESVRTLASDLDIRIPYATDP
AGNRLPDPELHPDSTLTAWPDNRIAEDAHYVYRHDEYGRLTEKTDRIPAGVIRTDDERTH
HYHYDSQHRLVFYTRIQHGEPLVESRYLYDPLGRRMAKRVWRRERDLTGWMSLSRKPEVT
WYGWDGDRLTTVQTDTTRIQTVYEPGSFTPLIRVETENGEREKAQRRSLAETLQQEGSEN
GHGVVFPAELVRLLDRLEEEIRADRVSSESRAWLAQCGLTVEQLARQVEPEYTPARKVHF
YHCDHRGLPLALISEDGNTAWRGEYDEWGNQLNEENPYYLHQPYRLPGQQHDEESGLYYN
RNRYYDPLQGRYITQDPIGLAGGWNLYNYPLNPIIRMDPLGLYNLYQLLYDVWHDDSYGT
SSIDITGSGDLISLGGHAGLGVAFAKKKGEMLSDICIYATACGHAGIGGGINAAITYSET
KSLPTSGVSNSVGVTVGGGVGGHFAYTYVVDVDNPESSTESVGIGAGVDASVMTLACRTW
QECWVN