Protein Info for KEDOAH_23890 in Escherichia coli ECRC99

Name: ycdZ
Annotation: Inner membrane protein YcdZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 173 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 36 to 52 (17 residues), see Phobius details amino acids 59 to 80 (22 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 109 to 127 (19 residues), see Phobius details amino acids 133 to 156 (24 residues), see Phobius details PF06496: DUF1097" amino acids 18 to 151 (134 residues), 128.9 bits, see alignment E=8.8e-42

Best Hits

Swiss-Prot: 99% identical to YCDZ_ECOLI: Inner membrane protein YcdZ (ycdZ) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to ecs:ECs1413)

Predicted SEED Role

"Inner membrane protein YcdZ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (173 amino acids)

>KEDOAH_23890 Inner membrane protein YcdZ (Escherichia coli ECRC99)
MAAFSAIMRGMNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGL
AISAATLLSGVVWAMVIIYGSALAPHLEILSYVITGIVAFLMCIQAKQLLLSFVPGTFIG
ACATFAGQGDWKLVLPSLALGLIFGYAMKNSGLWLAARSAKTALREQEIKNKA