Protein Info for KEDOAH_21930 in Escherichia coli ECRC99

Annotation: DUF1418 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 95 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 46 to 68 (23 residues), see Phobius details PF07214: DUF1418" amino acids 1 to 92 (92 residues), 144 bits, see alignment E=5.3e-47

Best Hits

Swiss-Prot: 99% identical to YBJC_ECOLI: Uncharacterized protein YbjC (ybjC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to eco:b0850)

Predicted SEED Role

"YbjC protein, clustered with oxygen-insensitive NADPH nitroreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (95 amino acids)

>KEDOAH_21930 DUF1418 domain-containing protein (Escherichia coli ECRC99)
MRAIGKLPKSVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEVQILMIFLGVLLMLPAA
VVVILQVAKRLAPQLMNRPPQYSRSEREKDNDANH