Protein Info for KEDOAH_14070 in Escherichia coli ECRC99

Name: yihL
Annotation: Uncharacterized HTH-type transcriptional regulator YihL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 PF00392: GntR" amino acids 8 to 70 (63 residues), 69.7 bits, see alignment E=1.4e-23 PF07702: UTRA" amino acids 91 to 230 (140 residues), 76.7 bits, see alignment E=1.6e-25

Best Hits

Swiss-Prot: 100% identical to YIHL_ECO57: Uncharacterized HTH-type transcriptional regulator YihL (yihL) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 100% identity to eco:b3872)

Predicted SEED Role

"Hypothetical transcriptional regulator yihL"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (236 amino acids)

>KEDOAH_14070 Uncharacterized HTH-type transcriptional regulator YihL (Escherichia coli ECRC99)
MAENQSTVENAKEKLDRWLKDGITTPGGKLPSERELGELLGIKRMTLRQALLNLEAESKI
FRKDRKGWFVTQPRFNYSPELSASFQRAAIEQGREPSWGFTEKNRTSDIPETLAPLIAVT
PSTELYRITGWGALEGHKVFYHETYINPEVAPGFIEQLENHSFSAVWEKCYQKETVVKKL
IFKPVRMPGDISKYLGGSAGMPAILIEKHRADQQGNIVQIDIEYWRFEAVDLIINL