Protein Info for KEDOAH_11405 in Escherichia coli ECRC99

Name: panM
Annotation: aspartate 1-decarboxylase autocleavage activator PanM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 PF12568: PanZ" amino acids 2 to 125 (124 residues), 196.4 bits, see alignment E=1.1e-62 PF00583: Acetyltransf_1" amino acids 17 to 95 (79 residues), 26.8 bits, see alignment E=5.4e-10

Best Hits

Swiss-Prot: 100% identical to PANZ_ECOLI: PanD regulatory factor (panZ) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eco:b3459)

MetaCyc: 100% identical to PanD maturation factor (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"probable acetyltransferase YPO3809"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (127 amino acids)

>KEDOAH_11405 aspartate 1-decarboxylase autocleavage activator PanM (Escherichia coli ECRC99)
MKLTIIRLEKFSDQDRIDLQKIWPEYSPSSLQVDDNHRIYAARFNERLLAAVRVTLSGTE
GALDSLRVREVTRRRGVGQYLLEEVLRNNPGVSCWWMADAGVEDRGVMTAFMQALGFTAQ
QGGWEKR