Protein Info for KDGMDA_18670 in Klebsiella pneumoniae MKP103

Annotation: 23S rRNA accumulation protein YceD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 173 PF02620: YceD" amino acids 62 to 171 (110 residues), 74.5 bits, see alignment E=3.9e-25

Best Hits

Swiss-Prot: 92% identical to YCED_ECOL6: Large ribosomal RNA subunit accumulation protein YceD (yceD) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K07040, uncharacterized protein (inferred from 99% identity to kpe:KPK_3470)

Predicted SEED Role

"COG1399 protein, clustered with ribosomal protein L32p"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (173 amino acids)

>KDGMDA_18670 23S rRNA accumulation protein YceD (Klebsiella pneumoniae MKP103)
MQKVKLPLTLDPVRTAQKRLDYEGIYARDQVERVTDSVVSVDSDVECSMSFAIDNQRLAV
ITGDAKVTVTLECQRCGKPFSHHVHTTYCFSPVRNDEQAEALPEAYEPIEVNEFGEIDLQ
AMVEDEIILSLPVVPVHDSEHCEVSDADMVFGELPEEAQKPNPFAVLASLKRK