Protein Info for JDDGAC_30265 in Escherichia coli ECRC98

Annotation: IS66-like element ISEc8 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 PF13007: LZ_Tnp_IS66" amino acids 39 to 110 (72 residues), 55 bits, see alignment E=2.3e-18 PF13005: zf-IS66" amino acids 119 to 161 (43 residues), 50.2 bits, see alignment 5.2e-17 PF03050: DDE_Tnp_IS66" amino acids 176 to 461 (286 residues), 352.8 bits, see alignment E=3.3e-109 PF13817: DDE_Tnp_IS66_C" amino acids 468 to 505 (38 residues), 60.4 bits, see alignment 3.1e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to ecf:ECH74115_1651)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (512 amino acids)

>JDDGAC_30265 IS66-like element ISEc8 family transposase (Escherichia coli ECRC98)
MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP
GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT
DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH
LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLSRHSELAKAFAYALNQWPA
LTYYANDGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDP
ESYLRHVLGVIADWPVNRVSELLPWRIALPAE