Protein Info for JDDGAC_28090 in Escherichia coli ECRC98

Annotation: AMP nucleosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 840 transmembrane" amino acids 232 to 250 (19 residues), see Phobius details amino acids 257 to 274 (18 residues), see Phobius details PF13569: DUF4132" amino acids 574 to 757 (184 residues), 178.9 bits, see alignment E=5e-57

Best Hits

KEGG orthology group: None (inferred from 100% identity to ecf:ECH74115_3099)

Predicted SEED Role

"Molybdate metabolism regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (840 amino acids)

>JDDGAC_28090 AMP nucleosidase (Escherichia coli ECRC98)
LLAIHEDKEWRKALVKLITATPELVCDVIPWVNAKAAGILSECRPQSVAEECEYATVDML
PELLVSPPWMTKEKKKNTPVFDLPVLPVPSVSDVTPEITKKLTRTYLVTHFQQIAQQQAT
KQTLFTDLPPIKKASWEKHLIPLTPEQQILWHLGFEKWRESGEKIYEKIPAPQSAVDALL
RFDFPALNAEFVHYHNNAYKSWNLIALCYLPGQQAISFLNQIVKEDNYSGEGNILAIFGS
AAIPAFMACLQRDPRRLCFFPFFLGVSELALPMAQQLQKKMSYEDARNWLTDYPRHAAAG
LLPVALGKKGKDRDCARQALRLLVNLNQRETIEEIAQGYNQPDVLAALATLFDSDPLEEY
PAKIAPLPGFYQFTLWRRPRLKSNNLPLSDDAMRHLGTMLSFPRDITAYAGLDIIREIFT
RESLAEFGWDLYPAWTEAGAPAKENWAFTSLGILGNDDTARKLTPLIRAWPGESQHKRAV
SGLDVLADIGSDVALMLLNGIARKIKFKALQEHAREKINIVAENRGLTMAELEDRLAPDL
GLDSSGSLILDFGPRKFTVGFDETLKPVVCDANGKVLKDLPKPNQSDEKTQATDAVNLFK
QLKKDVRAIASQQIDRLEQAMCQRRRWTAEQFRLFLVEHPLVRHLTRRLLWGVYNDENAL
ITCFRVAEDSTYSDAQDELFTLPAGNIGIPHVLEISPESAAAFRQIYADYELLPPFQQLE
RGSYHLADNERNTHELTRWQGRLCQAGRIVGLERRGWQRLEESGSVYAMRKTTPHGDLEL
ETEPFSLIYGETGYGDQHPVESVKITSPDDRYGKQSSLTFSMLDDITASELINDIESLFD