Protein Info for JDDGAC_26350 in Escherichia coli ECRC98

Name: yfdY
Annotation: Uncharacterized protein YfdY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 80 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 27 to 48 (22 residues), see Phobius details amino acids 55 to 77 (23 residues), see Phobius details PF10810: DUF2545" amino acids 1 to 80 (80 residues), 140.8 bits, see alignment E=6.5e-46

Best Hits

Swiss-Prot: 98% identical to YFDY_ECOLI: Uncharacterized protein YfdY (yfdY) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to eck:EC55989_2672)

Predicted SEED Role

"FIG00638164: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (80 amino acids)

>JDDGAC_26350 Uncharacterized protein YfdY (Escherichia coli ECRC98)
MFYLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIF
MFLAPACGLMIRFMVGYGRR