Protein Info for JDDGAC_24520 in Escherichia coli ECRC98

Name: ygaM
Annotation: Uncharacterized protein YgaM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 109 transmembrane" amino acids 87 to 106 (20 residues), see Phobius details PF05957: DUF883" amino acids 15 to 62 (48 residues), 52.8 bits, see alignment E=3e-18 PF19029: DUF883_C" amino acids 78 to 107 (30 residues), 51 bits, see alignment E=9.2e-18

Best Hits

Swiss-Prot: 100% identical to YGAM_ECOLI: Uncharacterized protein YgaM (ygaM) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eco:b2672)

Predicted SEED Role

"FIG00638140: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (109 amino acids)

>JDDGAC_24520 Uncharacterized protein YgaM (Escherichia coli ECRC98)
MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRAR
MHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGALLSMRKS