Protein Info for JDDGAC_23945 in Escherichia coli ECRC98

Name: ygcG
Annotation: TPM-phosphatase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 176 to 194 (19 residues), see Phobius details amino acids 201 to 219 (19 residues), see Phobius details amino acids 225 to 249 (25 residues), see Phobius details PF04536: TPM_phosphatase" amino acids 32 to 154 (123 residues), 130.1 bits, see alignment E=2.4e-42

Best Hits

KEGG orthology group: K06872, (no description) (inferred from 100% identity to ece:Z4093)

Predicted SEED Role

"Uncharacterized protein YgcG"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>JDDGAC_23945 TPM-phosphatase domain-containing protein (Escherichia coli ECRC98)
VIVMRLIFILFTLWCLPGLAQQIAVPELRQQVTDITGTLSTSEQQSLTQQLQDITHKTRA
QVAVLVVPSTGDDSIEQYATRVFDSWKLGDKQRNDGILLLVAWEDHAVRIEVGYGLEGVV
TDLQAAKIIRDILIPAFKSDDLMGGLTLASENIGALLLNGELPEDRGDYYSINPPIPLSL
AVIILLAVLSYFIVFTDPSNLPWITLTGAIYGMVFLYVAEPGPWTNLIVACGMLTPFAIV
PLVIFWLIVNKKLRAKYKKLSKDRASRKGSSSSSSGGGSSGGGSGGGFSGGGGSSGGGGA
SGRW