Protein Info for JDDGAC_22165 in Escherichia coli ECRC98

Name: ygjV
Annotation: Inner membrane protein YgjV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 36 to 59 (24 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 100 to 111 (12 residues), see Phobius details amino acids 113 to 113 (1 residues), see Phobius details amino acids 116 to 157 (42 residues), see Phobius details PF10688: Imp-YgjV" amino acids 5 to 163 (159 residues), 201 bits, see alignment E=4.9e-64

Best Hits

Swiss-Prot: 98% identical to YGJV_ECOLI: Inner membrane protein YgjV (ygjV) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to ecz:ECS88_3486)

Predicted SEED Role

"Inner membrane protein ygjV"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (183 amino acids)

>JDDGAC_22165 Inner membrane protein YgjV (Escherichia coli ECRC98)
MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILN
AIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFRCKGLTMRC
VMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPPAID
ERG