Protein Info for JDDGAC_20080 in Escherichia coli ECRC98

Name: yhiM
Annotation: Inner membrane protein YhiM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 39 to 61 (23 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 107 to 133 (27 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 188 to 211 (24 residues), see Phobius details amino acids 223 to 246 (24 residues), see Phobius details amino acids 258 to 281 (24 residues), see Phobius details amino acids 293 to 312 (20 residues), see Phobius details amino acids 325 to 344 (20 residues), see Phobius details PF10951: DUF2776" amino acids 2 to 347 (346 residues), 518.1 bits, see alignment E=6.4e-160

Best Hits

Swiss-Prot: 100% identical to YHIM_ECOLI: Inner membrane protein YhiM (yhiM) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eco:b3491)

Predicted SEED Role

"FIG00638244: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (350 amino acids)

>JDDGAC_20080 Inner membrane protein YhiM (Escherichia coli ECRC98)
VNIYIGWLFKLIPLIMGLICIALGGFVLESSGQSEYFVAGHVLISLAAICLALFTTAFII
ISQLTRGVNTFYNTLFPIIGYAGSIITMIWGWALLAGNDVMADEFVAGHVIFGVGMIAAC
VSTVAASSGHFLLIPKNAAGSKSDGTPVQAYSSLIGNCLIAVPVLLTLLGFIWSITLLRS
ADITPHYVAGHVLLGLTAICACLIGLVATIVHQTRNTFSTKEHWLWCYWVIFLGSITVLQ
GIYVLVSSDASARLAPGIILICLGMICYSIFSKVWLLALVWRRTCSLANRIPMIPVFTCL
FCLFLASFLAEMAQTDMGYFIPSRVLVGLGAVCFTLFSIVSILEAGSAKK