Protein Info for JDDGAC_17505 in Escherichia coli ECRC98

Name: rhaT
Annotation: L-rhamnose/proton symporter RhaT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 transmembrane" amino acids 17 to 40 (24 residues), see Phobius details amino acids 54 to 73 (20 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details amino acids 174 to 196 (23 residues), see Phobius details amino acids 209 to 229 (21 residues), see Phobius details amino acids 241 to 261 (21 residues), see Phobius details PF06379: RhaT" amino acids 1 to 262 (262 residues), 545 bits, see alignment E=3.9e-168

Best Hits

KEGG orthology group: K02856, L-rhamnose-H+ transport protein (inferred from 100% identity to ece:Z5452)

Predicted SEED Role

"L-rhamnose-proton symporter" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (263 amino acids)

>JDDGAC_17505 L-rhamnose/proton symporter RhaT (Escherichia coli ECRC98)
MWGIGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTPIINGNFDVLINTEGGRMTLLGV
LVALIGVGIVTRAGQLKERKMGIKAEEFNLKKGLVLAVMCGIFSAGMSFAMNAAKPMHEA
AAALGVDPLYVALPSYVVIMGGGAIINLGFCFIRLAKVKDLSLKADFSLAKPLIIHNVLL
SALGGLMWYLQFFFYAWGHARIPAQYDYISWMLHMSFYVLCGGIVGLVLKEWNNAGRRPV
TVLSLGCVVIIVAANIVGMGMAN