Protein Info for JDDGAC_17335 in Escherichia coli ECRC98

Name: rhsA
Annotation: RHS element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1394 PF20148: DUF6531" amino acids 46 to 123 (78 residues), 63.6 bits, see alignment 3.6e-21 TIGR01643: YD repeat (two copies)" amino acids 343 to 377 (35 residues), 17.1 bits, see alignment (E = 6.2e-07) amino acids 409 to 444 (36 residues), 18.7 bits, see alignment (E = 1.9e-07) amino acids 451 to 482 (32 residues), 16 bits, see alignment (E = 1.4e-06) amino acids 473 to 508 (36 residues), 21.7 bits, see alignment (E = 2.2e-08) amino acids 575 to 612 (38 residues), 34.8 bits, see alignment (E = 1.6e-12) amino acids 596 to 627 (32 residues), 18.5 bits, see alignment (E = 2.2e-07) amino acids 637 to 678 (42 residues), 24.2 bits, see alignment (E = 3.4e-09) PF05593: RHS_repeat" amino acids 361 to 392 (32 residues), 23.9 bits, see alignment (E = 9.2e-09) amino acids 489 to 511 (23 residues), 24.7 bits, see alignment (E = 5e-09) amino acids 534 to 568 (35 residues), 29.2 bits, see alignment (E = 1.9e-10) amino acids 575 to 611 (37 residues), 41 bits, see alignment (E = 3.8e-14) amino acids 637 to 674 (38 residues), 39.2 bits, see alignment (E = 1.4e-13) PF03527: RHS" amino acids 1143 to 1180 (38 residues), 52.3 bits, see alignment (E = 7.7e-18) TIGR03696: RHS repeat-associated core domain" amino acids 1170 to 1247 (78 residues), 80.7 bits, see alignment 8.4e-27 PF14220: DUF4329" amino acids 1262 to 1381 (120 residues), 55 bits, see alignment E=1.6e-18

Best Hits

Swiss-Prot: 97% identical to RHSA_ECOLI: Protein RhsA (rhsA) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to eck:EC55989_4415)

Predicted SEED Role

"core protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1394 amino acids)

>JDDGAC_17335 RHS element protein (Escherichia coli ECRC98)
MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACSVCPGGVTSGHPVNPLLGAKVLPG
ETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRLQLRDNTLILSDNGGRS
LYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQALPEELRLSPHRYLATNSPQ
GPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRTQTFHREAAGEFSGEITGVTDG
AGRHFRLVLTTQAQRAEEARQQAISGGTEPSAFPDTLPGYTEYGRDNGIRLSAVWLTHDP
EYPENLPAAPLVRYGWTPRGELAVVYDRSGKQVRSFTYDDKYRGRMVAHRHTGRPEIRYR
YDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLNRREVLHTQGEGGLKRVVKKEHADGSV
TQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHSQLTSATGP
DGLEIRREYDEWGRLIQETAPDGDITRYRYDNPHSDLPCATEDATGSRKTMTWSRYGQLL
SFTDCSGYVTRYDHDRFGQMTAVHREEGLSQYRSYDSRGQLIAVKDTQGHETRYEYNAAG
DLTTVIAPDGSRNGTQYDAWGKAICTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDV
LDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRLTHRTVKGETAERWQY
DERGWLTDISHISEGHRVTVHYGYDEKGRLTGERQTVHHPQTEALLWQHETRHAYNAQGL
ANRCIPDSLPAVEWLTYGSGWLAGMKLGDTPLVDFTRDRLHRKTLRRFGRYELTTAYTPA
GQLQSQHLNSLQYDRDYTWNDNGELIRISSPRQTRSYSYSDSGRLTGVHTTAANLDIRIP
YATDPAGNRLPDPELHPDSTLSMWPDNRIARDAHYLYWYDRHGRLTEKTDLIPEGVIRTD
DERTHRYHYDSQHRLVHYTRTQYEEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSR
KPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADALQQ
SGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVAQMQSQMDPVYTPA
RKIHLYHCDHRGLPLALISKEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEES
GLYYNRHRYYDPLQGRYITQDPIGLKGGWNLYTYPLSPVNGMDPLGLYEFKSKNIDDIGI
FALAMCNGESINENKEYGGLICKKQGEYFPMNPISSNDNDSVDLRNIKCPEGSERVGDYH
THGFYSDDKGNKVTKENDVYDSLNFSSKDLTNSYMNGMGKKECSSYLGTPNNTYLKYNPK
AKGNGVTIIRQGSN