Protein Info for JDDGAC_14640 in Escherichia coli ECRC98

Name: dnaJ
Annotation: molecular chaperone DnaJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 PF00226: DnaJ" amino acids 5 to 67 (63 residues), 101.8 bits, see alignment E=2.7e-33 TIGR02349: chaperone protein DnaJ" amino acids 5 to 347 (343 residues), 476.9 bits, see alignment E=2.4e-147 PF01556: DnaJ_C" amino acids 117 to 330 (214 residues), 187.2 bits, see alignment E=2.8e-59 PF00684: DnaJ_CXXCXGXG" amino acids 144 to 204 (61 residues), 68.2 bits, see alignment E=9.2e-23

Best Hits

Swiss-Prot: 100% identical to DNAJ_ECO81: Chaperone protein DnaJ (dnaJ) from Escherichia coli O81 (strain ED1a)

KEGG orthology group: K03686, molecular chaperone DnaJ (inferred from 100% identity to etw:ECSP_0015)

MetaCyc: 100% identical to chaperone protein DnaJ (Escherichia coli K-12 substr. MG1655)
1.8.4.-

Predicted SEED Role

"Chaperone protein DnaJ" in subsystem Heat shock dnaK gene cluster extended or Protein chaperones

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (376 amino acids)

>JDDGAC_14640 molecular chaperone DnaJ (Escherichia coli ECRC98)
MAKQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS
QKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYN
MELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQ
QTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPAGVDTGDRIRLAGEGEAGEHGAP
AGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVKLKVPGETQTG
KLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLNEKQKQLLQELQESFGGPTGEHNSPRS
KSFFDGVKKFFDDLTR