Protein Info for JDDGAC_12905 in Escherichia coli ECRC98

Name: araJ
Annotation: putative arabinose efflux permease AraJ, MFS family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 35 to 55 (21 residues), see Phobius details amino acids 62 to 86 (25 residues), see Phobius details amino acids 92 to 113 (22 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 150 to 171 (22 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details amino acids 229 to 253 (25 residues), see Phobius details amino acids 260 to 278 (19 residues), see Phobius details amino acids 283 to 307 (25 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 347 to 368 (22 residues), see Phobius details PF07690: MFS_1" amino acids 2 to 333 (332 residues), 113.9 bits, see alignment E=8e-37

Best Hits

Swiss-Prot: 63% identical to OPDE_PSEAE: Transcription regulatory protein OpdE (opdE) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 100% identity to eok:G2583_0374)

Predicted SEED Role

"Putative transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>JDDGAC_12905 putative arabinose efflux permease AraJ, MFS family (Escherichia coli ECRC98)
MTLCVFVLIASEFMPVSLLTPIARDLGVTEGLAGRGIAISGALAVLTSLTLSTLAGKMNR
KFLLLGMTVLMAVSGLIIALATSYLMYMVGRAMIGVAIGGFWSMSAATAIRLVPQHQVTR
ALAIFNAGNALATVVAAPLGSYLGATVGWRGAFLCLVPMAVVAFIWQCISLPSMDANKSH
TSCGAVFRLFSRRMVVVGMIACGLFFMGQFALFTYVRPFLESVTRVNSLGLSLILLIIGV
AGFIGTLVVSIFLNRKFYPTLMAIPGLMAVIAIGLMLTGHHVWMVSLLLGLWGMLATAAP
TGWWTWIARTLPDNAEAGGGLMVAVIQLSIALGSTAGGIVFDRLGWQSTFAMSSVLLLCA
GVLTFVTARQKAGAL