Protein Info for JDDGAC_12880 in Escherichia coli ECRC98

Name: yagU
Annotation: Inner membrane protein YagU

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 204 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 98 to 120 (23 residues), see Phobius details amino acids 132 to 151 (20 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details PF07274: DUF1440" amino acids 26 to 181 (156 residues), 157.9 bits, see alignment E=8.4e-51

Best Hits

Swiss-Prot: 100% identical to YAGU_ECOLI: Inner membrane protein YagU (yagU) from Escherichia coli (strain K12)

KEGG orthology group: K08996, putative membrane protein (inferred from 100% identity to eco:b0287)

Predicted SEED Role

"DUF1440 domain-containing membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (204 amino acids)

>JDDGAC_12880 Inner membrane protein YagU (Escherichia coli ECRC98)
MNIFEQTPPNRRRYGLAAFIGLIAGVVSAFVKWGAEVPLPPRSPVDMFNAACGPESLIRA
AGQIDCSRNFLNPPYIFLRDWLGLTDPNAAVYTFAGHVFNWVGVTHIIFSIVFAVGYCVV
AEVFPKIKLWQGLLAGALAQLFVHMISFPLMGLTPPLFDLPWYENVSEIFGHLVWFWSIE
IIRRDLRNRITHEPDPEIPLGSNR