Protein Info for JDDGAC_12385 in Escherichia coli ECRC98
Name: fbpC
Annotation: ferric ABC transporter ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to FBPC_ECO57: Fe(3+) ions import ATP-binding protein FbpC (fbpC) from Escherichia coli O157:H7
KEGG orthology group: K02010, iron(III) transport system ATP-binding protein [EC: 3.6.3.30] (inferred from 100% identity to ecs:ECs0413)Predicted SEED Role
"ABC transporter ATP-binding protein"
Isozymes
No predicted isozymesUse Curated BLAST to search for 3.6.3.30
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (348 amino acids)
>JDDGAC_12385 ferric ABC transporter ATP-binding protein (Escherichia coli ECRC98) MSQKNFVELRNVTKRFGSNTVIDNINLTIPQGQMVTLLGPSGCGKTTILRLVAGLEKPSE GQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVSRSEVKQRVKEA LAMVDLEGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRDKIR ELQKQFNITSLYVTHDQSEAFAVSDTVLVMNKGHIMQIGSPQDLYRQPASRFMASFMGDA NLFPANFSEEYVDIYGYRLPRAAHFPVQGSGTVGVRPEAITLSNHGEESQRCVIRHVAYM GPQYEVTVEWHGQEILLQVNATRLQPDIGEHYYLEIHPYGMFVLADAA