Protein Info for JDDGAC_11700 in Escherichia coli ECRC98

Annotation: adhesin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1461 PF19077: Big_13" amino acids 181 to 270 (90 residues), 36.4 bits, see alignment 1.6e-12 amino acids 396 to 470 (75 residues), 43.3 bits, see alignment 1.1e-14 amino acids 596 to 669 (74 residues), 33.1 bits, see alignment 1.8e-11 amino acids 695 to 763 (69 residues), 31.6 bits, see alignment 5e-11 amino acids 803 to 869 (67 residues), 39.4 bits, see alignment 1.8e-13 amino acids 1293 to 1369 (77 residues), 42.8 bits, see alignment 1.6e-14 PF17936: Big_6" amino acids 197 to 253 (57 residues), 39.9 bits, see alignment (E = 1.1e-13) PF13750: Big_3_3" amino acids 437 to 495 (59 residues), 16.5 bits, see alignment (E = 1.4e-06) amino acids 737 to 862 (126 residues), 22.7 bits, see alignment E=1.7e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to ece:Z0609)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1461 amino acids)

>JDDGAC_11700 adhesin (Escherichia coli ECRC98)
MSLIIDVISRKTSVKQTLINPGDVTVVIYEPSVVQVHAQASAVARYVREGNDLLIYMQDG
TVIRCNGYFLQAANTAEQSELVFADGQQLTHITFADTAAGGLAPVELTAQTTAIESIAPF
LDTVAQTSAFPWGWLAGAAVGGGALGALLASGGDGDSKTEVINNPTPPAEPGNATPSFLV
TDNQGDQRGILATNDITDDTTPTFSGSGQAGATIQIKDSNGNTIASTQVDNNGHWSVSLP
TQSAGEHTWSVVQIVGSTITDAGSITLTIDNSQASVQVATTAGDNIINASEQAAGFTLSG
TSSHLAQGTELTVTLNGKTYTTSVGANGAWSVQVPTADAQALGEGNQAVLVSGKDATGNT
VTGAQLLTVDTQPPTLAINTIAQDNIISAAEHNVALVLSGTSNAEAGQTVTLTVNGKSHT
ATVGSDGTWQVTLPATEVQALAEGNYAVNASVSDRAGNTTSHSANFTVDTSAPVVSVNTV
AGDDILNNAEQAVAQIISGQVSGASPGDTVTVKLGTHVLTGIVLADGSWNVALDPAVTRT
LDRGANTIFVTVTDAAGNTGAASRAITLVGVSPLITINTVSGDDIISGAEKGAPLTLTGS
TQQAETGQTVTVTLAGQSFTTTVQADGSWSLTVPAAAMGNLPDGAVAITASVTDLSGNTG
NTSRTITVDSQAPALSIDPLTADNIINAAESGQDLPITGTTDAQPGQTVTVTLNGQTYQG
VVQPDGTWSVTVPAANVGALADGNATVTASVNDVAGNPSSVSRVALVDATPPVVTINPVA
TDNVINTPEHAQAQIISGTVTGAQAGDIVTVTLNNVDYTTVVDGSGNWSLGVPASVVSGL
ADGSYPVSVSVTDKAGNTGSQSLTVTVNTAAPLIGINSIAGDDVINASEKGADLQITGTS
DQPVNTAITVTLNGQNYTTTTDASGNWSVTVPASAVTALGQANYTVTAAVTSDIGNSATA
SHNVLVDSALPGVTINPVATDDIINAAEAGVAQTISGQVTGAEDGDTVTITLGGNTYTAT
VGSNLTWSVDVPAADIQALGNGDLTVNASVTNQNGNTGSGTRDITIDANLPGLRVDTVAG
DDVVNIIEHGQALVVTGSSSGLAESTPLTVTINNVEYTTAVQADGSWSVGVTAAQVSAWP
AGTVNIAVSGESSAGNSVSITHPVTVDLTPAAITINTIATDDVINAAEKGADLTLSGTTT
NVEPGQTVTVTFGGKNYTASVASDGSWTATVPAADLASLPEGSASALASVSNINGNSASA
VHNYSVDSSAPTIIINTVASDNIVNASEADAGVTVSGSTTAEAGQIVTITLNSPTVQTYQ
ATVQADGSWSINIPAADLEALTDGSHTLTATVNDKAGNPASTTHNLAVDLTVPVLTINTI
AGDDIINATEHGQALVISGSSTGGEAGDVVTVTLNSKTYTTTLDASGNWSVGVPAADVTA
LGSGPQTVTATVTDAAGNSDN