Protein Info for JDDGAC_11695 in Escherichia coli ECRC98

Annotation: Putative RTX family exoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4500 5188 PF19077: Big_13" amino acids 363 to 436 (74 residues), 29.5 bits, see alignment (E = 1.7e-10) amino acids 561 to 632 (72 residues), 31.9 bits, see alignment (E = 3.1e-11) amino acids 962 to 1034 (73 residues), 32.1 bits, see alignment (E = 2.7e-11) amino acids 1069 to 1134 (66 residues), 27.5 bits, see alignment (E = 7.6e-10) amino acids 1570 to 1633 (64 residues), 27.6 bits, see alignment (E = 7.2e-10) amino acids 2058 to 2133 (76 residues), 30.9 bits, see alignment (E = 6.4e-11) amino acids 2269 to 2332 (64 residues), 30.7 bits, see alignment (E = 7.3e-11) amino acids 2658 to 2732 (75 residues), 31.7 bits, see alignment (E = 3.6e-11) amino acids 3243 to 3330 (88 residues), 33.7 bits, see alignment (E = 8.9e-12) amino acids 3432 to 3530 (99 residues), 31 bits, see alignment (E = 6.3e-11) amino acids 3553 to 3630 (78 residues), 31 bits, see alignment (E = 6.2e-11) amino acids 3656 to 3722 (67 residues), 31.4 bits, see alignment (E = 4.6e-11) amino acids 3840 to 3933 (94 residues), 42 bits, see alignment (E = 2.4e-14) amino acids 3947 to 4040 (94 residues), 35 bits, see alignment (E = 3.5e-12) amino acids 4055 to 4148 (94 residues), 35.1 bits, see alignment (E = 3.2e-12) amino acids 4160 to 4252 (93 residues), 48 bits, see alignment (E = 3e-16) amino acids 4265 to 4359 (95 residues), 34.2 bits, see alignment (E = 6.2e-12) PF12245: Big_3_2" amino acids 574 to 632 (59 residues), 12.9 bits, see alignment (E = 2.1e-05) amino acids 3664 to 3723 (60 residues), 11.2 bits, see alignment (E = 6.9e-05) amino acids 3904 to 3932 (29 residues), 11.9 bits, see alignment (E = 4.1e-05) PF13517: FG-GAP_3" amino acids 4531 to 4593 (63 residues), 29 bits, see alignment (E = 2.7e-10) amino acids 4646 to 4718 (73 residues), 35.5 bits, see alignment (E = 2.4e-12) amino acids 4761 to 4822 (62 residues), 29.9 bits, see alignment (E = 1.4e-10) TIGR03661: type I secretion C-terminal target domain (VC_A0849 subclass)" amino acids 5083 to 5185 (103 residues), 31.2 bits, see alignment (E = 2e-11)

Best Hits

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (5188 amino acids)

>JDDGAC_11695 Putative RTX family exoprotein (Escherichia coli ECRC98)
VPASAVGALGEASYTVTANVTDSAGNSNSASHNVQVNTALPGVTINPVATDDIINAAESG
NAQTISGQVTGAAAGDTVTVTLGGKTYTATVQGNLSWSVDVPAADIQAIGNGNLTVNASV
TNGVGNTGSGSRDITIDANLPGLRVDTVAGDDVVNSIEHAQALVITGSSSGLAAGAALTV
VINTVTYAATVLADGTWSVGVPAADVSNWPAGTVNITVSGTNTAGTTSTITHPVTVDLAA
VAISINTVSGDDVINAAEKGADLTLSGSTSGVEVGQTVTVTFGGKTYTATVAGDGSWTTT
VPAADLSVLRDGDATVQASVSTINGNTASATHAYSVDATAPTLAINTIATDDILNAAEAG
NPLTISGSSTAEAGQTVTVTLNGVTYSGSVQADGSWSVSLPTADLSNLTASQYTVSASVS
DKAGNPASANHGLAVDLTVPVLTINTVSGDDIINAAEHGQALVISGSSTGGEAGDVITVT
LNSKTYTTMLDASGNWSVGVPAADVTALGSGPQTITAAITDAAGNSDDASRTVTVNLAAP
TIGINTIATDDVIKATEKGADLQITGTSNQPAGTTITVTLNGQNYTATTDSNGNWSATVP
ASAVSALGEANYTVTANVTDTAGNSNSASHNVLVNSALPAVTINAVATDDIINAAESGNA
QTISGQVTGAAQGDTVTVTLGGNTYTATVQSNLSWSVDVPAADIQALGNGDLTVNASVTN
GVGNTGSGSRDITIDANLPGLRVDTVAGDDVINSIEHNQALVITGSSSGLTAGTALTVEI
NNVTYGATVLADGTWSLGVPAVDVSNWPAGTVNITVSGTNSAGTTSTITHPVTVDLAGVA
ITINTLSGDDVINAVEKGETLVVSGSTSGVEAGQTVTVTFGGKNYTTTVEANGSWTVNVP
PADLAALPDGAGNVQASVSNINGNSAQADRAYSVDATAPLVTINTIASDDILNVSEAGAG
ITISGTTTAQAGQTLTVTLNNNTYQTTVLADGTWSVNVPAADLSGLTASSYTVTATVSDK
AGNPASADHALVVDITAPDLTINTVAGDDIINAIEHGQALVVSGTSTGAAAGDVVTVTLN
GKNYTTTLDASGNWSVGIPAADVTALATGSQTITASLSDRAGNSDSTTHDVTVDLSGPTL
TINTVSGDDIINAAEIVVAQTISGQVTGTAVAGNTVIVTIGGNQYNATVQSDLSWSVSVP
ANVLQALGNGELTISASLTNSANNTGTATHDIVIDANLPGLRVDTVAGDDVINSIEHTQA
LVITGSSSGLAAGAALTVVINSVTYGATVLADGSWSVGVPVADVTNWPAGTVNIAVSGTN
TAGTTTSISHPVTVDLAAVAITINTLSTDDVINAAEKGSDLQLSGTTSGVEAGQTITVIF
GGKSYTTTVAADNTWGLTIPAVDVATLPDGAANVQASVSNVAGNSTQATHAYSVDATAPS
VTINTIATDDILNAAEAGSALTISGTSTAEAGQTVTVTLNGVNYSGNVQADGSWSVSVPT
GDLASLTASSYTVNASVSDKARNSASATHNLTVDLAAPVVTINTVAGDDIINATEHGQAQ
IISGSATGATTGNTVSVTIGTTTYTTVLDANGNWSIGVPASVISALAQGDVTITATVTDS
AGNSGTASHTVTVALGAPVLAINTIAVDDIINAAEKGADLAITGTSNQPAGTQITVTLNG
QNYTTTADASGNWSVTVPASRVSALGEATYTVTAAATDADGNSGSASHNVQVNTALPGVT
INVVATDDIINAAEAGVEQTISGQVTGAAAGDTVTVTLGGATYTATVQANLSWSVDVPAS
ALQELGNGELTISASVTNSVGNTGNGTREITIDANLPGLRVDTVAGDDVVNIIEHGQALV
ITGSSSGLAAGSNVTLTINGQTYVAAVLADGTWSVGVPAVDVSAWPAGSVTIAASGSTSA
GNPVSVTHPVTVDLSAVAVSINAITADDVINAAEKGAALTLSGSTSGVEAGQTVTVTFGG
KTYSATVAANGSWSTSVPAADMAALRDGDASAQASVSNVNGNSATTTHAYSVDASAPTVT
INTIAGDDILNAAEAGAALTITGSSTAEAGQTVTVTLNGTNYTGTVQTDGSWSVSVPSAD
LSTLTASNYTVNAAVSDKAGNPASVNHNLTVDTSVPVVTINTVAGDDVINATEHAQAQII
SGSATGAATGSTVTVTIGTNTFTTVLDASGNWSVGVPASVVSALANGTVTINASVTDAGG
NSGSATHQVTVNTGLPTITFNAISGDNILNADEKGQPLTISGGSTGLATGAQVTVTLNGH
NYSATTDASGNWTLTVPVSDLAALGQANYTVSASATSAAGNTASSQANLLVDSGLPDVTI
NTVAGDDIINAAEAGADQTISGVVTRAAAGDTVTVTLGGNTYTATVQSNLSWSVSVPTAD
LQALGNGDLTITASVTNANGNTGSGTRDITIDANLPGLRVDTVAGDDIVNSIEHGQALVI
TGGSSGLNAGAVLTVTINSVAYSATVQADGSWSVGIPAANVSAWPAGPLTVEVDGQSSAN
NPVSVSHPFTVDLTAVAISINTVASDDVINAAEKGTNLTLSGSTSGIESGQTVTVTFGGK
TYTASVAANGSWSVNVPAADLATLPEGAANVQASVSSASGNSASATHAYSVDASAPTLTI
NTIASDDILNAAEAGSPLTISGTSTAETGQTVTVTLNGATYTGTVQADGSWSVSVPTSAL
GALNTSNYTVSATVNDKAGNPGSASHNLAVDTTAPVLTINTVAGDDIINDAEHAQALVIS
GTSSGGEAGDVVSVVLNGKTYTTTLDASGNWSVGVPAADVTALGSGAQTITASVSDRAGN
SDDASRTVTVSLSAPVISINTIAGDDVINATEKGSDLALSGTSDQPAGTAITVTLNGQNY
SATTDASGNWSVTVPASAVSALGEATYSVTASVTNAQGNSSTASHNVQVNTALPGITINP
VATDDIINASEAGSAQTISGQVTGAAAGSTVTVELGGKTYTATVQADLSWNVSVPAADWQ
ALGNGELTVNASVTNAVGNTGSGTRDITIDASLPGLRVDTVAGDDVVNIIEHAQAQVITG
SSSGFAAGTALTVVINNQTYAATVLANGSWSVGVPATDVSNWPAGTLNITVSGANSAGTQ
TSITHPLTVDLTAVAISMNSITSDDAINAAEKGAALTLSGSTSGVEAGQTVTVTFGGKTY
TTTVAANGSWSTTVPAADLAALRDGDASAQVRVTNVNGNSATATHEYSVDSAAPTVTINT
IASDNIINASEAAAGVTVSGTSTAQTGQTLTVTLNGTNYQTTVQTDGSWSLTLPASDLTA
LANNGYTLTATVSDLAGNLGSASKGVTVDTTAPVISFNTVAGDDVINNVEHIQAQIISGT
ATGAVAGDRLVVTIAGQQYVTSTDASGNWSVGVPASVISGLADGTVTISATITDSAGNSS
TQTHNVQVNTAAVSLSVSTISGDNLINAAEAGSALTLSGTGTNFATGTVVTVLLNGKGYS
ATIQSNGSWSVNVPAADVAALSDGTSYTVSASAQDSAGNSATASRSVAVDLTAPVISINT
VSTDDRLNAAEQQQPLTLNGSTSAEVGQTVTVTFGGKTYTATVAANGTWALNVPAVDLAA
LGQGAQTITASVNDRAGNPGQATHALTVDTVAPTVTIATVAGDDIINNAEQLAGQTISGT
TTAEVGQTVTVTFNGQTWSATVGSGGSWSVFIPAQQFAGLSDGSYTISATVSDQAGNPGS
ASRGVTLNGDVPTVTINTFAGDDVVNAAEHGSSLVISGTTTAPVGQTLTLTLNGKTYTTT
VQTGGSWSYTLGSADVTALADGNAYVINASVSNAIGNTGSSNHTITVDLSAPAMGINIDS
LQADTGLSASDFITSVSPVVVNGSLTAALASNETAQISIDGGTTWTTLTVTGTTWRYNDS
RTLTDGNYLYQVRVIDAAGNVGATDSQNVVIDTTAPDPAVKTIAISAITTDMGLITNDFV
TSDTTLAVSGTLGATLSAGEFAQISLDGGVTWTTLTVVGTSWSYADGHTLTDGTWNYTVR
VVDLAGNVGQTATQNVVVDTTSPEAAKSITITGISDDTGTSSSDFITSDTTLTVRGVLGA
ALGANEFAQISTDNGATWVNVTVAADSLNWSYVDGRTLTNGTTTWQVRVVDLAGNVGATS
SQSALIDTVNPAQVLTIASISTDTGSSATDFITSDTMLTLTGSLGAGLASGEVAQISLDS
GATWTTLTTNGTQWTYTDSRTLTDGSYVYQVRVLDLAGNTGPVVSKTVVVDTINPTATPT
IVSYTDDVGQRQGTLSSSQATDDTTPLLNGVLSAPLASGEVVYLYRNGLLLGAVTMVGAL
NWTYSDSGLVSGAYTYSARVVDLAGNITSSSDFVLTVDTSIPTTLAQITSQTTRDTTPII
SGVITAALASGQYVEVVINGKTYTSEPGGAVVVDPAHNTWYVQLPDTDALTVSATAYTVT
AQVKSSAGNGNNANISNGTVTVNAAIDYTPTWTTASKTTAWGLTYGLDSHGMWTVLANQQ
VMQSTDPLTWSKTALTLYQSGNNYATSSIADYDRNGTGDLFITRDDYGTGYINGFTNNGD
GTFSSAIQVTVGTLTWYGSIVAFDKEGDGYLDFWIGDAGGPDSNTFLWNNAGTLVGNSTT
SNSGGSATVGGAVTGYLSLNEGSGVDLNNDGRIDLVQHTYNLNNYYTLSSLINQGNGTFV
WGQNTTNTFLSGAGSGAMSSSVSMTWADFDGDGDMDLFLPASQGRANYGSLLFNTNGVLG
SPVAVGATATTYASQFSLAVDWNHDGLMDIARIAQTGQSYLYTNVSNASNWTQSALGGSQ
SGTTSGVAAMDYDWDGAVDVLVSKQSGSVFLSRNTNTVSYGTSLHLRITDPNGINVYYGN
TVKLYNSAGVLVATQIINPQSGMGVNDTSALVNFYGLNAGETYNAVLIKSTGTTASNIDQ
TVNTSWGGLQATDATHAYDLSAEAGTASNNGKFVGTGYNDTFFATAGTDTYDGSGGWVYS
SGTGTWLANGGMDVVDFRLSTVGVTANLSSTAAQATGFNTSTFTNIEGISGSNFNDILTG
SSGDNQLEGRGGNDTLNIGNGGHDTLLYKLLNASDATGGNGSDVVNGFTVGTWEGTADTD
RIDIRELLQGSGYTGNGKASYVNGVATLDAQAGNIGDFVKVTQSGSDTIVQIDRDGTGGT
FATTNVVTLTGVHTDLATLLANHQLMVV