Protein Info for JDDGAC_09495 in Escherichia coli ECRC98

Name: ybjS
Annotation: Uncharacterized protein YbjS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 PF04321: RmlD_sub_bind" amino acids 13 to 264 (252 residues), 40.5 bits, see alignment E=6.5e-14 PF00106: adh_short" amino acids 15 to 88 (74 residues), 27.6 bits, see alignment E=7e-10 PF01370: Epimerase" amino acids 15 to 246 (232 residues), 102.7 bits, see alignment E=7.5e-33 PF16363: GDP_Man_Dehyd" amino acids 16 to 336 (321 residues), 34.2 bits, see alignment E=6.9e-12 PF01073: 3Beta_HSD" amino acids 16 to 268 (253 residues), 61.8 bits, see alignment E=2e-20 PF13460: NAD_binding_10" amino acids 19 to 183 (165 residues), 36.3 bits, see alignment E=1.9e-12 PF07993: NAD_binding_4" amino acids 67 to 185 (119 residues), 26.5 bits, see alignment E=1.3e-09

Best Hits

Swiss-Prot: 100% identical to YBJS_ECOLI: Uncharacterized protein YbjS (ybjS) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to sbo:SBO_0801)

Predicted SEED Role

"Putative nucleotide di-P-sugar epimerase or dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (349 amino acids)

>JDDGAC_09495 Uncharacterized protein YbjS (Escherichia coli ECRC98)
MRTSFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFV
PADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRN
FIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRP
QSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS
GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLT
HYGVSKLNFDFTLDITRAQEELGYQPVITLDEDIEKTAAWLRDHGKLPR