Protein Info for JDDGAC_07125 in Escherichia coli ECRC98

Name: ycfT
Annotation: Inner membrane protein YcfT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 49 to 70 (22 residues), see Phobius details amino acids 90 to 113 (24 residues), see Phobius details amino acids 133 to 156 (24 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 196 to 213 (18 residues), see Phobius details amino acids 224 to 256 (33 residues), see Phobius details amino acids 276 to 297 (22 residues), see Phobius details amino acids 310 to 331 (22 residues), see Phobius details PF01757: Acyl_transf_3" amino acids 6 to 326 (321 residues), 96.3 bits, see alignment E=9.9e-32

Best Hits

Swiss-Prot: 99% identical to YCFT_ECOLI: Inner membrane protein YcfT (ycfT) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to eco:b1115)

Predicted SEED Role

"FIG00638640: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (357 amino acids)

>JDDGAC_07125 Inner membrane protein YcfT (Escherichia coli ECRC98)
MKQKELWINQIKGLCICLVVIYHSVITFYPHMTTFQHPLSEVLSKCWIYFNLYLAPFRMP
VFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQWLALSALNQWLAPERDLSN
ASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIFSRLALPLFALFVLLSVAVNF
VPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLRRHLLMASLLAALAVGAWLFTIS
LLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSNTIAIYTTHRILVEIFSLTLLAQMN
AARWSPQVELTLLLVYPFVSLFICTVAGLLVRKLSQRAFSDLLFSPPSLPVAVSYSR