Protein Info for JDDGAC_01985 in Escherichia coli ECRC98

Name: ynhF
Annotation: stress response protein YnhF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 29 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details

Best Hits

Swiss-Prot: 100% identical to YNHF_ECOL5: Uncharacterized protein YnhF (ynhF) from Escherichia coli O6:K15:H31 (strain 536 / UPEC)

KEGG orthology group: None (inferred from 100% identity to eco:b4602)

MetaCyc: 100% identical to cytochrome bd-I accessory subunit CydH (Escherichia coli K-12 substr. MG1655)
RXN0-5266 [EC: 7.1.1.7]; 1.11.1.- [EC: 7.1.1.7]; 1.11.1.- [EC: 7.1.1.7]

Predicted SEED Role

No annotation

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.1.1.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (29 amino acids)

>JDDGAC_01985 stress response protein YnhF (Escherichia coli ECRC98)
MSTDLKFSLVTTIIVLGLIVAVGLTAALH