Protein Info for JDDGAC_00930 in Escherichia coli ECRC98
Name: yebG
Annotation: DNA damage-inducible protein YebG
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 99% identical to YEBG_ECOLI: Uncharacterized protein YebG (yebG) from Escherichia coli (strain K12)
KEGG orthology group: K09918, hypothetical protein (inferred from 99% identity to eco:b1848)Predicted SEED Role
"DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (96 amino acids)
>JDDGAC_00930 DNA damage-inducible protein YebG (Escherichia coli ECRC98) MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLW LAEQKDVLSTILKTGKLPSPQVVGAESEEEDASRAA