Protein Info for JDDGAC_00360 in Escherichia coli ECRC98

Name: fliD
Annotation: flagellar filament capping protein FliD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF02465: FliD_N" amino acids 11 to 103 (93 residues), 75.8 bits, see alignment E=3.4e-25 PF07195: FliD_C" amino acids 219 to 449 (231 residues), 236.3 bits, see alignment E=3.2e-74

Best Hits

Swiss-Prot: 100% identical to FLID_ECO57: Flagellar hook-associated protein 2 (fliD) from Escherichia coli O157:H7

KEGG orthology group: K02407, flagellar hook-associated protein 2 (inferred from 100% identity to ecf:ECH74115_2699)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (465 amino acids)

>JDDGAC_00360 flagellar filament capping protein FliD (Escherichia coli ECRC98)
MASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKLSAYGTLKSALTTFQTA
NTALSKADLFSATSSTTAFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIAT
SDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSN
DTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISD
ALENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGAD
SQSSSNGALLGDSTLRTIQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLT
AALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYN
AASDRIDAQVARYKEQFTQLDVLMTSLNSTSSYLTQQFENNSNSK