Protein Info for IAI46_25040 in Serratia liquefaciens MT49

Annotation: FadR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 PF00392: GntR" amino acids 19 to 77 (59 residues), 65.9 bits, see alignment E=2.1e-22 PF07729: FCD" amino acids 110 to 225 (116 residues), 91 bits, see alignment E=7.9e-30

Best Hits

Swiss-Prot: 68% identical to YIEP_ECOLI: Uncharacterized HTH-type transcriptional regulator YieP (yieP) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 97% identity to spe:Spro_4894)

Predicted SEED Role

"Transcriptional regulator, GntR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (229 amino acids)

>IAI46_25040 FadR family transcriptional regulator (Serratia liquefaciens MT49)
MQFNAQQQAAQRNLSYLLAEKLGQQILAGDYQAGSILPGEMELGEQFGVSRTAVREAVKM
LAAKGMLLPRPRIGTRVMPQSQWNFLDQDLLTWWMTKENFDQVMQHFLILRTSLEPQACS
LAAANASTQQTARLAELMAEMRALHVQFDREHWIQVDTQFHQLIYEASGNPFLTSFANLF
SSVYQSYFRAITGNEVIKLQNHQAIVDAILAGDGAGALAACQVLLREKD