Protein Info for IAI46_24785 in Serratia liquefaciens MT49

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 PF13439: Glyco_transf_4" amino acids 13 to 183 (171 residues), 58.9 bits, see alignment E=1.7e-19 PF13579: Glyco_trans_4_4" amino acids 13 to 179 (167 residues), 31.5 bits, see alignment E=5.4e-11 PF20706: GT4-conflict" amino acids 151 to 315 (165 residues), 27 bits, see alignment E=5.7e-10 PF00534: Glycos_transf_1" amino acids 198 to 341 (144 residues), 93.9 bits, see alignment E=2.1e-30 PF13692: Glyco_trans_1_4" amino acids 201 to 338 (138 residues), 83.8 bits, see alignment E=3.7e-27

Best Hits

KEGG orthology group: None (inferred from 92% identity to spe:Spro_4834)

Predicted SEED Role

"Lipopolysaccharide core biosynthesis glycosyl transferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>IAI46_24785 glycosyltransferase (Serratia liquefaciens MT49)
MRILMIIDGLPGGGAEKVVLTLCQGMQQMGNDVSLISLRDVCNYPIPTGIHYQVVADSSR
SPWRKLTELSRRAAALDKAIADNERQQGAYDLVFSNLHKTDRIVSRSKLLSSDRLWFCIH
GILSTSYLGHRKGLDRWLKQRKIAAVYQGRNIVAVSKAVGDDLQRNLPIQPSRLEVINNP
FDIASIEQQAAEPCELAGKDYLVHVGRFHPHKRHDRLLKAYAQSGIQAPLALIGTGSESH
IAQVKQLANQLGIAERVLFLGFQANPYPFIRHASLLVLSSDSEGFGNVLVEALLCDTPVV
STRCPGGPAEILEKAGMENALADLNEKSLAEKMAEMYASPPEINHQQLLSYGLQPICQQY
LSLKK