Protein Info for IAI46_24625 in Serratia liquefaciens MT49

Annotation: DUF805 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 transmembrane" amino acids 19 to 38 (20 residues), see Phobius details amino acids 44 to 63 (20 residues), see Phobius details amino acids 74 to 92 (19 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details PF05656: DUF805" amino acids 7 to 132 (126 residues), 78.9 bits, see alignment E=1.9e-26

Best Hits

Swiss-Prot: 68% identical to YIIR_ECOLI: Uncharacterized protein YiiR (yiiR) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 94% identity to spe:Spro_4803)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (141 amino acids)

>IAI46_24625 DUF805 domain-containing protein (Serratia liquefaciens MT49)
MTIQQWCFSFKGRIGRRDFWIWMVLWVVLMAVAFSLASNKLVDIQTIAFFIVGLLWPTAA
VLVKRLHDRNKAGWWALLLIVAWLLAAGNWQMLAPVWQWGVGRFIPTLIIVMMMIDLGAF
VGTPEDNRFGPPAKPVKFGAD