Protein Info for IAI46_24305 in Serratia liquefaciens MT49

Annotation: AsmA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 677 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 633 to 655 (23 residues), see Phobius details PF05170: AsmA" amino acids 1 to 569 (569 residues), 491.6 bits, see alignment E=6.5e-151 PF13502: AsmA_2" amino acids 425 to 598 (174 residues), 56.7 bits, see alignment E=4e-19

Best Hits

Swiss-Prot: 61% identical to YHJG_ECOLI: AsmA family protein YhjG (yhjG) from Escherichia coli (strain K12)

KEGG orthology group: K07290, hypothetical protein (inferred from 91% identity to spe:Spro_4747)

Predicted SEED Role

"Uncharacterized protein YhjG"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (677 amino acids)

>IAI46_24305 AsmA family protein (Serratia liquefaciens MT49)
MTKTGKAFTWVGGIVLLIIVALVIFALAFDWNRLKPTINDKVSAELHRPFAIRGDLGVAW
TRDKDEGGWRAWVPWPRIHAEDIVLGNPENIPGDTMVQLQRVEASISPLALLGKEVLIPR
IWLKQPNASLRRLANGENNWTFNLAGDPNQPPSDWTVNVHDIVFDKGQIAFKDATLKADF
RAEIDPLGKPLPFSEVTGKKDASKAITPDYVFGWKVKGTYNGEPLAGSGKIGGMLSLQSA
DSPFPLQADVRSGSTRVVVAGTLSDPMNLGGLDLQLKFSGDSLGNLYGLTGVLLPNTPPY
STDGHLSARLHEKGGAVFQYQKFDGKIGDSDIHGDLTYVASKPRPKLSGEVLSKQLRFAD
LAPLIGADSNTEKAGRGEKSRQPAGKVLPVEKFETQSWKVMDADVKFTAKRIEHGSSLPL
SDLYTHLQLNNGAILMDPLRFGVAGGNLNATLRLDGSKNPMQGRVDMHARKFQLKQLLPN
VGSMKRSLGQLNGDAKLTGTGNSVADLLATSSGDLRMVINNGVISRSLMEILGLNVGNYL
VAQLFGDDVVGINCAAADIGISTGVAAPRLFVFDTENAIINISGNTNLATERLDLSIDPE
SKGMRVLTLRSPLYVKGTFAHPDAGVKAGPLIARGAAAVALGVVLTPAAALLALVSPSEG
GEENQCGQILQQMKKKK