Protein Info for IAI46_24290 in Serratia liquefaciens MT49

Annotation: inner membrane protein YhjD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 transmembrane" amino acids 71 to 96 (26 residues), see Phobius details amino acids 136 to 155 (20 residues), see Phobius details amino acids 186 to 211 (26 residues), see Phobius details amino acids 228 to 250 (23 residues), see Phobius details amino acids 262 to 282 (21 residues), see Phobius details amino acids 295 to 321 (27 residues), see Phobius details TIGR00766: inner membrane protein YhjD" amino acids 52 to 326 (275 residues), 412 bits, see alignment E=4.6e-128 PF03631: Virul_fac_BrkB" amino acids 66 to 326 (261 residues), 150.1 bits, see alignment E=4.6e-48

Best Hits

Swiss-Prot: 76% identical to YHJD_ECOLI: Inner membrane protein YhjD (yhjD) from Escherichia coli (strain K12)

KEGG orthology group: K07058, membrane protein (inferred from 98% identity to spe:Spro_4744)

Predicted SEED Role

"Inner membrane protein YhjD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (339 amino acids)

>IAI46_24290 inner membrane protein YhjD (Serratia liquefaciens MT49)
MPTGSDKDPRQPNSEAPQKPLIDIKTGHQTLDRRISGFSRLVERIKAWPSIAHLLRATER
FNDRLGSQFGAAITYFSFLSLIPILMVSFAAVGFVLASNPDLLTGLINKIVGSISDPTLA
GTLKNTVNTAIQQRTTVGLTGLALALYSGISWMGNLREAIRAQSRDVWERNPQDQEKIYF
KYTRDFISLTGLVVALIITLTLTSIAGSAQAAIVQALGLEGIEWLRPAMTLIALSISIFA
NYLLFLWIFWMLPRHKPKKKALLRGTLLAAIGFEVIKFVMTMTLPQVAKSPSGAAFGSVI
GLMAFFYFFARLTLFCAAWIATAQYKEDKTLPTSEQSAP