Protein Info for IAI46_22995 in Serratia liquefaciens MT49

Annotation: CsbD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 69 PF05532: CsbD" amino acids 4 to 56 (53 residues), 82.4 bits, see alignment E=8.4e-28

Best Hits

Swiss-Prot: 87% identical to Y631_PECAS: UPF0337 protein ECA0631 (ECA0631) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: None (inferred from 93% identity to yep:YE105_C3574)

Predicted SEED Role

"UPF0337 protein yjbJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (69 amino acids)

>IAI46_22995 CsbD family protein (Serratia liquefaciens MT49)
MNKDQADGNWKQFKGKVKEKWGKLTDDDLTVIEGKREQLVGKIQERYGYQKEAAEKEVKS
WEDHNKYRW