Protein Info for IAI46_22695 in Serratia liquefaciens MT49

Annotation: AsmA2 domain-containing protein YhdP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1271 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 1212 to 1235 (24 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 2 to 1267 (1266 residues), 1465.8 bits, see alignment E=0 PF13116: DUF3971" amino acids 504 to 782 (279 residues), 328.5 bits, see alignment E=4.6e-102 PF13502: AsmA_2" amino acids 1014 to 1257 (244 residues), 220 bits, see alignment E=3.5e-69

Best Hits

Swiss-Prot: 55% identical to YHDP_ECOLI: Uncharacterized protein YhdP (yhdP) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 60% identity to eca:ECA0272)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1271 amino acids)

>IAI46_22695 AsmA2 domain-containing protein YhdP (Serratia liquefaciens MT49)
MRRLPGILLATGATLIVIVALLISGLRLALPELNNYRPQLLAKVESLSGVPVQVDFIQGS
WETFGPQLEMRNVRATLPKSNLKIERVTLALDVWQSLLHLRWQFRDLTFHQLQFDLNTTL
GGDEHQGSTIEPGKITDLLLHQLDHFDLRDSRISFLTPAGARAEFEIPQLTWLNGRDRHR
AEGQISLSTLNGQHGVVQLRMDLRDNQGLLNTGTVYMQADNIDMKPWFTRWLRANTGLES
ADFSLAAWLQIQNGEIATGSALLKQGAANWNVGTQAHRLDVDNLALTLSRQGTGWQVDVP
QLNLATDGQAWPQGKLSALWLPENTEFLGPGQTEELRVRATDIQLERLAALLPTFSFLSP
DVLDRWNDLQPQGKVNALALDIPLKQPEKTRFQALWQDVSWQHWKLLPGVNHFSGALSGG
VENGRLQLDLKNSTLPYGDMFRAPLEISSARGALTWQNNDQGWELASQNLDVKAKSLWVN
GDFRYQQPAKGDPWLNILAGIRLYDGADAWRYFPEPLMGKHLVDYLSGAIQGGQVDNATL
IYNGDPQHFPYRKNEGQFEVFVPLRHSTFQFQPDWPALTDLAIDLDFANEGLWMNAPQTK
LGKVDGKNVSAVIPDYLKERLLVDAEVAGQGGEIHDYFKQTPLHDSLGSALDELQIGGNV
SGRLHLDIPLNGELVRATGEVALNNNSLLVKPIDSELQKVSGKFRFDNGNLSSDTLSANW
FGQPVAVDFNTQEGKNDYKVNVGLKADWQPGKFPGIPQEVSDALSGSAPWQGQVAIVLPH
QGAASYDIGVDADLKKVSSHLPSPLDKPVGEPLPLSVKVKGGLNGFMLTGSAGKQNKFNS
EWTFAKQQVTLARAAWQTAGSGTPPLPNGKSLTLNLPPLDGEKWLGLMAPALKQSGGMGK
VGGFNFPTTVALKTPQLLLGGQAWHKLTLSAEKQLGATLVSAKGDEVDGSLRVADRGPWR
ADINYLYYNPQFDAAKSTPTATAAAQVAADKVSFRDWPSLMLRCKSCWVMGQNLGKVEAD
LTNQGDTLLLTHGLVDTGKGRMTASGLWKQNAQEERSSLKGKLLGAKIDETAAFFGITTP
LKGAPYDVDFDLYWRGQPWKPQLNTLSGALKINMGKGEIDSMGGGRAGQLLRLVSFDALL
RKLQFDFSDTFGKGFYFDSIRSTSWLKDGIMHTDNLLVDGLAADIAMSGQIDLARRQIDM
EAVVAPEISATVGVATAFVINPIVGAAVFAASKVLGPLWNKISLIRYHIGGSLDQPKINE
VLRKPKEDKAS