Protein Info for IAI46_22365 in Serratia liquefaciens MT49

Annotation: stringent starvation protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 PF02798: GST_N" amino acids 10 to 81 (72 residues), 70 bits, see alignment E=4.3e-23 PF13409: GST_N_2" amino acids 21 to 82 (62 residues), 61.8 bits, see alignment E=1.9e-20 PF13417: GST_N_3" amino acids 21 to 87 (67 residues), 55.8 bits, see alignment E=1.2e-18 PF00043: GST_C" amino acids 102 to 194 (93 residues), 47.4 bits, see alignment E=4.7e-16 PF13410: GST_C_2" amino acids 125 to 168 (44 residues), 26.2 bits, see alignment 1.8e-09

Best Hits

Swiss-Prot: 85% identical to SSPA_ECOLI: Stringent starvation protein A (sspA) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to srr:SerAS9_4452)

Predicted SEED Role

"Stringent starvation protein A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (213 amino acids)

>IAI46_22365 stringent starvation protein A (Serratia liquefaciens MT49)
MAVAANKRSVMTLFSGPTDIFSHQVRIVLAEKGVSVEIEQVELDNLPQDLIDLNPYQTVP
TLVDRELTLYESRIIMEYLDERFPHPPLMPVYPVARGESRLMMLRIEKNWYSLMYKIEQS
NGQEAESARRQLREELLAIAPIFGQTPYFMSEEFSLVDCYLAPLLWRLPQLGIELSGAGS
KELKGYMTRVFERDAFLASLTEAEREMRLQTRG