Protein Info for IAI46_21035 in Serratia liquefaciens MT49

Annotation: iron ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 589 transmembrane" amino acids 14 to 37 (24 residues), see Phobius details amino acids 70 to 92 (23 residues), see Phobius details amino acids 104 to 126 (23 residues), see Phobius details amino acids 145 to 167 (23 residues), see Phobius details amino acids 206 to 227 (22 residues), see Phobius details amino acids 252 to 272 (21 residues), see Phobius details amino acids 303 to 330 (28 residues), see Phobius details amino acids 361 to 385 (25 residues), see Phobius details amino acids 406 to 427 (22 residues), see Phobius details amino acids 456 to 476 (21 residues), see Phobius details amino acids 511 to 528 (18 residues), see Phobius details amino acids 552 to 581 (30 residues), see Phobius details PF00528: BPD_transp_1" amino acids 80 to 276 (197 residues), 47 bits, see alignment E=1.3e-16 amino acids 381 to 578 (198 residues), 40.1 bits, see alignment E=1.7e-14

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 98% identity to srs:SerAS12_4156)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (589 amino acids)

>IAI46_21035 iron ABC transporter permease (Serratia liquefaciens MT49)
MNTWRRKWQSLPRGLVVVITALVIYVPLSFIVIQSFLSAPFFSPSKVFSLEAFEFIFTDP
DFYKALKSGFILAFGLVVIAIPLGGILAFLMVRTDLPGRRFIEPLILVPIFVSPMVLGFG
YVVAAGPVGFFSLWAESLLGFVPWNIYSMASIVVIAGLTHVPHAYLYISSALRSVGSDVE
EAARTAGASPLQVMTAVSLPMVRPSILYAGVLLFFLGLEVFGLMLVLGDPEGNLVLATYL
YQLTNKLGTPSYHLMAAVAVVLICITIPLVMLQRRLMRTANRFVTVKGKASQARALPLGK
WRWVAGAVVVFWLTVTIGVPLVGVVLRAFISNWGVGVSIWDELSLNTFRTIWQQPNLLRA
IVNSMAIGVIGGALAVVCYLFIGIAMHRKPDGATRFLDYSVLVPRAVPGLLAGLAFLWVF
LFLPMWLDKSLKEGWLSALPVAEWLRENLIVWLRSLRSTIFSVWLAYTVVWMAYGLRLIS
STLLQVGPELEEAARSAGASRGQITRHVTIPLSRYGLIGSWLLMFLIFEREYSTGVYLLS
PGTETIGSMLVSLWAAGAIDIVAALSFINILLVVLGLGIALRFGVKLHD