Protein Info for IAI46_20825 in Serratia liquefaciens MT49

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 PF00072: Response_reg" amino acids 3 to 113 (111 residues), 76.6 bits, see alignment E=1.7e-25 PF00486: Trans_reg_C" amino acids 148 to 216 (69 residues), 65.7 bits, see alignment E=3.2e-22

Best Hits

Swiss-Prot: 90% identical to RSSB_SERMA: Swarming motility regulation protein RssB (rssB) from Serratia marcescens

KEGG orthology group: None (inferred from 96% identity to srr:SerAS9_4118)

Predicted SEED Role

"Swarming motility regulation protein rssB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (222 amino acids)

>IAI46_20825 response regulator (Serratia liquefaciens MT49)
MNILLVEDDLQLGKALCRALELAGFDLCWVRLVHDAQHKLSEGSFDLMLLDLTLPDGDGL
KKLIEWRAAGQNIPIIILTARDRIESLVNSLDSGADDFLAKPFALPELISRVKAVNRRMA
GFASQTWSLGNLYLDPMNHQVTLDDELLLLSKKEYRLLHELMRCAGTVVRKAALEQRLFG
NGDNVESNSLEVHMHNLRRKIGKERIITVRGIGYLLKKEPQG