Protein Info for IAI46_20685 in Serratia liquefaciens MT49

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 14 to 32 (19 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 82 to 101 (20 residues), see Phobius details amino acids 108 to 131 (24 residues), see Phobius details amino acids 143 to 164 (22 residues), see Phobius details amino acids 176 to 197 (22 residues), see Phobius details amino acids 243 to 267 (25 residues), see Phobius details amino acids 278 to 297 (20 residues), see Phobius details amino acids 309 to 328 (20 residues), see Phobius details amino acids 334 to 356 (23 residues), see Phobius details amino acids 364 to 388 (25 residues), see Phobius details amino acids 400 to 419 (20 residues), see Phobius details PF07690: MFS_1" amino acids 21 to 383 (363 residues), 149.8 bits, see alignment E=4.9e-48

Best Hits

KEGG orthology group: None (inferred from 72% identity to spe:Spro_0039)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (437 amino acids)

>IAI46_20685 MFS transporter (Serratia liquefaciens MT49)
MDNNLHHSTVKKINLRLIPFIMLLYLIAYIDRANISVAALQMNADLALTAEMYGIAAGIF
FVSYILFEIPSNIILTHVGAKIWIARIMVTWGIIAMGMSLVQTPLQLYIMRFLLGVAEAG
FTPGIIYYLSCWYPRSDRARAMSMFYIGAALASLIGLPISGAILQMNDVLSIAGWRWLFL
LEGAPAVLLGIAVYFYLDNKPEDAKWLKPQQRAWLTGILTQEARQTPTQQEHHWQAAFKN
RKVWLLSLMWLLQAFGTIGIGLFLPLIIKGVVSEQSNFIITLLSAVPFLFACLFMYFNGH
YSDTHRARALPLGLPLIFSGLLLLMAIFSTNLALAYVLLVFTIALNWAIIPIFWAVTTET
VSGVAAAASIALINAVANIVGLALPPVIGRIKDMTNSYDAALIMVAIALVLGGIIGLQVG
RRKHIAKLPVHQDMPEH