Protein Info for IAI46_20660 in Serratia liquefaciens MT49

Annotation: chaperone modulator CbpM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 101 PF13591: MerR_2" amino acids 8 to 92 (85 residues), 91.1 bits, see alignment E=1.5e-30

Best Hits

Swiss-Prot: 65% identical to CBPM_SHIB3: Chaperone modulatory protein CbpM (cbpM) from Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)

KEGG orthology group: None (inferred from 85% identity to spe:Spro_3861)

Predicted SEED Role

"Chaperone-modulator protein CbpM" in subsystem Protein chaperones

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (101 amino acids)

>IAI46_20660 chaperone modulator CbpM (Serratia liquefaciens MT49)
MANLKVTFTITEFCLHTGVTEEELTEIVGLGVIEPRNPATEEWIFDDRALITFHRAQQLH
HELALDWPGIAVTLTLLEEIEQLRKENSQLHQRLARFVTRP