Protein Info for IAI46_20530 in Serratia liquefaciens MT49

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 41 to 63 (23 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 96 to 119 (24 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 159 to 178 (20 residues), see Phobius details amino acids 199 to 223 (25 residues), see Phobius details amino acids 236 to 255 (20 residues), see Phobius details amino acids 263 to 283 (21 residues), see Phobius details amino acids 295 to 315 (21 residues), see Phobius details amino acids 327 to 349 (23 residues), see Phobius details amino acids 356 to 375 (20 residues), see Phobius details PF07690: MFS_1" amino acids 8 to 315 (308 residues), 156.3 bits, see alignment E=1e-49 PF00083: Sugar_tr" amino acids 39 to 174 (136 residues), 35.3 bits, see alignment E=6.8e-13

Best Hits

Swiss-Prot: 48% identical to YDHP_ECO57: Inner membrane transport protein YdhP (ydhP) from Escherichia coli O157:H7

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 97% identity to spe:Spro_3838)

Predicted SEED Role

"Putative sugar transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (384 amino acids)

>IAI46_20530 MFS transporter (Serratia liquefaciens MT49)
MPVSLLALALSAFAIGTTEFVIMGLLPEVAGDLQVSIPSAGWLISGYALGVAIGAPIMAL
LTAKLPRKKTLLLLMVIFIFGNIMCALGYSYDFLMLARIITALCHGAFFGIGAVVAANLV
PPNRRASAVALMFTGLTLANVLGVPLGTALGQALGWRSTFWAVAVIGVLSLLALYSKLPS
VKDEAPTDLKKELAALRGGGIWLSLLMTVAFAASMFALFTYIAPLLTEVTGVSSHGVSWT
LLLMGVGLTLGNILGGRLADWRLPLTLTCTFLVIACFAALFSWTSHSMVPAEITLFLWAA
AAFAAVPALQINVVTYGKKAPNLVSTLNIAAFNVGNAIGAWVGGVVIAQGLGLTSVPLAA
AGIALLGLVLCLVTFSRAKRPASA