Protein Info for IAI46_19975 in Serratia liquefaciens MT49

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 51 to 71 (21 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 138 to 162 (25 residues), see Phobius details amino acids 168 to 187 (20 residues), see Phobius details amino acids 219 to 241 (23 residues), see Phobius details amino acids 247 to 266 (20 residues), see Phobius details amino acids 278 to 297 (20 residues), see Phobius details amino acids 303 to 322 (20 residues), see Phobius details amino acids 341 to 361 (21 residues), see Phobius details amino acids 367 to 387 (21 residues), see Phobius details PF07690: MFS_1" amino acids 18 to 311 (294 residues), 119.2 bits, see alignment E=2e-38 amino acids 221 to 393 (173 residues), 52.5 bits, see alignment E=3.7e-18 PF00083: Sugar_tr" amino acids 41 to 184 (144 residues), 52.8 bits, see alignment E=3.3e-18

Best Hits

Swiss-Prot: 76% identical to YGAY_ECO57: Uncharacterized transporter YgaY (ygaY) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 96% identity to spe:Spro_3738)

Predicted SEED Role

"MFS permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>IAI46_19975 MFS transporter (Serratia liquefaciens MT49)
MSQQNSPPGLSPALIVLIAIATGLAVASNYYAQPLLETIAQNFGLSVNQAGFIVTAAQMG
YAVGLLLLVPLGDMFERRGLIVFMTLLAAGGMLITASSTTLPMMILGTALTGLFSVVAQI
LVPLAATLAHPEKRGKTVGIIMSGLLLGILLARTVAGALASIGGWRTIYWVASVLMILMA
LILWRALPRYKQHSGLNYPQLLKSIFTLFCGSPLLRTRAVLGALSFANFSVLWTSMAFLL
AAPPFGYSEGVIGLFGLVGAAGALAASRAGHLADQGKAGLTTTVGLVLLLLSWIPIAFAK
QSLWALIVGILILDLAVQAVHVTNQSVIYRIMPEARNRLTAGYMTSYFIGGALGSLLSAS
AYQHAGWTGVAAAGGILCLFNLLIWWLGKRHDPQGPAAI