Protein Info for IAI46_19315 in Serratia liquefaciens MT49

Annotation: enhanced serine sensitivity protein SseB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 276 PF07179: SseB" amino acids 15 to 132 (118 residues), 76.8 bits, see alignment E=1.7e-25 PF14581: SseB_C" amino acids 148 to 259 (112 residues), 116.8 bits, see alignment E=4.6e-38

Best Hits

KEGG orthology group: None (inferred from 96% identity to srs:SerAS12_3824)

Predicted SEED Role

"Protein SseB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (276 amino acids)

>IAI46_19315 enhanced serine sensitivity protein SseB (Serratia liquefaciens MT49)
MSSHHHDTATGENELERLLKLAVTEPAHRPAFFRELLDATVLILGDSEQVQHGGDITLNA
DTPVNIQHWEKQDGGSIIPFFSSVEALQKAVEDEQPFIAMPARVLFEITQGADLFLNPKA
EYGKEFYPEEVAMLLATGGVAKPAERYIDKDTQILLGQPEEYPSAMVDALTTLFSQRKPV
RRAFLALMHDQAVDEKPNLLVGLEVDGEPAEIEALINEAGSVASETAPNDEPVDFCLVSE
KERGVSHYLITHTQPFYQRRWGSWLRNIIPSTDKTQ