Protein Info for IAI46_19105 in Serratia liquefaciens MT49
Annotation: hydroxyethylthiazole kinase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 94% identical to THIM_SERP5: Hydroxyethylthiazole kinase (thiM) from Serratia proteamaculans (strain 568)
KEGG orthology group: K00878, hydroxyethylthiazole kinase [EC: 2.7.1.50] (inferred from 94% identity to spe:Spro_3578)MetaCyc: 63% identical to hydroxyethylthiazole kinase (Escherichia coli K-12 substr. MG1655)
Hydroxyethylthiazole kinase. [EC: 2.7.1.50]; 2.7.1.50 [EC: 2.7.1.50]; Choline kinase. [EC: 2.7.1.50, 2.7.1.32]
Predicted SEED Role
"Hydroxyethylthiazole kinase (EC 2.7.1.50)" in subsystem Thiamin biosynthesis (EC 2.7.1.50)
MetaCyc Pathways
- thiamine diphosphate salvage II (5/5 steps found)
- prenylated FMNH2 biosynthesis (3/3 steps found)
- thiamine diphosphate salvage V (3/3 steps found)
- thiamine diphosphate salvage IV (yeast) (5/7 steps found)
- thiamine diphosphate formation from pyrithiamine and oxythiamine (yeast) (4/8 steps found)
- plasmalogen biosynthesis I (aerobic) (2/16 steps found)
- superpathway of phospholipid biosynthesis II (plants) (10/28 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 2.7.1.32 or 2.7.1.50
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (264 amino acids)
>IAI46_19105 hydroxyethylthiazole kinase (Serratia liquefaciens MT49) MLARPDVFPGACAAACLTQFKRQSPLIHCLTNEVVQELTANVLLALGASPAMVVEPTEAA QFSRLADAVLINVGTLNASRAESMLAAVEAANVAQTPWTLDPVAVGGLVYRTAFAHRLLG EKPAAIRGNASEIMALSGLQANGRGVDSADDSLAALPAARELARSSGAVVAVTGVVDYIT DGQRDWAVTGGDVLMTRVVGTGCALSAVVAAFCSLPGDRLDNVATACRVMSLCGERATRR AAGPGSFTPAFLDALYQLRPEELQ