Protein Info for IAI46_19000 in Serratia liquefaciens MT49

Annotation: type II toxin-antitoxin system VapC family toxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 128 PF01850: PIN" amino acids 2 to 120 (119 residues), 57 bits, see alignment E=1.5e-19

Best Hits

KEGG orthology group: K07062, (no description) (inferred from 92% identity to spe:Spro_3558)

Predicted SEED Role

"VapC toxin protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (128 amino acids)

>IAI46_19000 type II toxin-antitoxin system VapC family toxin (Serratia liquefaciens MT49)
MYMFDTNTVSQLFRRHPRLLSLMEKIPPSAVCISSITQAELLYGVAKRQNLALKATVAAF
LDSVTVYAWDSEAAHCYGTLRAEMTQKGRVMGALDQLIAAHAQSRGATIVTNDRAFAMVP
GLTVEDWT