Protein Info for IAI46_17700 in Serratia liquefaciens MT49
Annotation: NADH-quinone oxidoreductase subunit C/D
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 92% identical to NUOCD_KLEP7: NADH-quinone oxidoreductase subunit C/D (nuoC) from Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
KEGG orthology group: K13378, NADH dehydrogenase I subunit C/D [EC: 1.6.5.3] (inferred from 92% identity to esc:Entcl_1443)MetaCyc: 91% identical to NADH:quinone oxidoreductase subunit CD (Escherichia coli K-12 substr. MG1655)
NADH-DEHYDROG-A-RXN [EC: 7.1.1.2]; 7.1.1.- [EC: 7.1.1.2]
Predicted SEED Role
"NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)" in subsystem Respiratory Complex I (EC 1.6.5.3)
MetaCyc Pathways
- aerobic respiration III (alternative oxidase pathway) (3/3 steps found)
- NADH to cytochrome bd oxidase electron transfer I (2/2 steps found)
- NADH to dimethyl sulfoxide electron transfer (2/2 steps found)
- NADH to fumarate electron transfer (2/2 steps found)
- NADH to hydrogen peroxide electron transfer (2/2 steps found)
- NADH to trimethylamine N-oxide electron transfer (2/2 steps found)
- nitrate reduction VIII (dissimilatory) (2/2 steps found)
- NAD(P)/NADPH interconversion (4/6 steps found)
- NADH to cytochrome bo oxidase electron transfer I (1/2 steps found)
- aerobic respiration I (cytochrome c) (2/4 steps found)
- Fe(II) oxidation (1/6 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.6.5.3
Use Curated BLAST to search for 1.6.5.3 or 7.1.1.2
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (598 amino acids)
>IAI46_17700 NADH-quinone oxidoreductase subunit C/D (Serratia liquefaciens MT49) MTDSTTHDALPAWQTRDHLDDPVIGELRNRFGPEAFTVQPSRTGMPVVWVKPDQLLEVMT FLRKQPKPYVMLFDLHGVDERLRTHRDGLPAADFSVFYHLISIERNRDIMLKVALSEKDL HVPTATKVFPNANWYERETWEMFGITFDGHPHLTRIMMPQTWEGHPLRKDYPARATEFDP FVLTKQKEDLEMEALTFKPEDWGMKRGTENEDFMFLNLGPNHPSAHGAFRIILQLDGEEI VDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGIKVPER VDTIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAW FRIGGVAHDLPRGWDRLLREFLEWMPKRLDSYVKAALKNSILKGRSVGVASYNAKEALEW GVTGAGLRATGIEFDVRKWRPYSGYENFDFEIPVGDGNSDCYTRVMLKVEELRQSLRILE QCLNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKG INSYYLTSDGSTMSYRTRVRTPSFAHLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR