Protein Info for IAI46_17095 in Serratia liquefaciens MT49

Annotation: PhzF family phenazine biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 TIGR00654: phenazine biosynthesis protein, PhzF family" amino acids 4 to 241 (238 residues), 97.6 bits, see alignment E=4.3e-32 PF02567: PhzC-PhzF" amino acids 9 to 255 (247 residues), 160 bits, see alignment E=4.6e-51

Best Hits

KEGG orthology group: K06998, (no description) (inferred from 86% identity to cko:CKO_01237)

Predicted SEED Role

"Phenazine biosynthesis protein PhzF" in subsystem Phenazine biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (263 amino acids)

>IAI46_17095 PhzF family phenazine biosynthesis protein (Serratia liquefaciens MT49)
MQQIDFYMIDAFSNTTFGGNAAAVCPLTEWLPDETLLKMAQQHNQSETAFFVANDTGFEL
RWFTSLAEINLCGHATLAAAHVIFEHLDYPGSTIHFATRFVGPLTVVRNDKWLTLDFPAW
ETKPVMPPALLLETLGITECKEVRVARDYLVVMENRQQVETVRPNINGMLPLGKMVCITA
PGDGEYDFVSRFFCPGEAVAEDPVTGSAHSMLIPYWAEKLNKTQMLAHQGLERGGDLRCQ
LVGDRVYIGGQATTYLIGKVLLR