Protein Info for IAI46_16340 in Serratia liquefaciens MT49

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 PF11398: DUF2813" amino acids 2 to 44 (43 residues), 22 bits, see alignment 2.9e-08 PF13476: AAA_23" amino acids 4 to 43 (40 residues), 33.1 bits, see alignment 2.8e-11 PF13304: AAA_21" amino acids 23 to 336 (314 residues), 100 bits, see alignment E=7.4e-32

Best Hits

KEGG orthology group: None (inferred from 94% identity to spe:Spro_3070)

Predicted SEED Role

"putative RecF protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (364 amino acids)

>IAI46_16340 AAA family ATPase (Serratia liquefaciens MT49)
MIQQLQLSGFRSIRNLQLQLGRLNVISGPNGCGKSNLYKAVRLIHEAACGRLSAALAEEG
GIQKAMWAGGLRPGDRRGDPKRMLLSATLDDFDYQLQLGFPEPTGSLFQLDPLVKEESLW
ISGHGRRPSTRVLERRNQSAFLTNIQGDRATYPASLHAEESVFGQLADPHLYPEVSQVRE
NLRQWRFYHEFAVWPGSPLRAPQVGIRAPVLAHDGSNLAAAFETICEIGNGELLRDILAQ
AFPDSEFEIQAPQGRFQLLMHRAGILRPLDSAELSDGTLRFLCLAVAMLSPRPPAFMAFN
EPENSLHPQLLPALAMLIAEASRYSQLWITSHSPQLAELIGRHSDVTHYQLAQQQGETLL
AEPD