Protein Info for IAI46_16320 in Serratia liquefaciens MT49

Annotation: VOC family metalloprotein YjdN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 138 PF06983: 3-dmu-9_3-mt" amino acids 3 to 135 (133 residues), 34.9 bits, see alignment E=2e-12 PF00903: Glyoxalase" amino acids 4 to 135 (132 residues), 38.3 bits, see alignment E=1.6e-13

Best Hits

KEGG orthology group: K04750, PhnB protein (inferred from 88% identity to spe:Spro_3064)

Predicted SEED Role

"PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (138 amino acids)

>IAI46_16320 VOC family metalloprotein YjdN (Serratia liquefaciens MT49)
MLIQPYLFFNGNCEQAINFYQQQLGARIEMIMRYKDMPEEAKQGGPQDVNPESIMHARLL
IGETALMASDGCPQDGGEASHKGFALSLDPSDVEQGRALFEKLAQGGQVTMPYQATFWAK
GFGMLTDQFGVNWMINVE