Protein Info for IAI46_16055 in Serratia liquefaciens MT49

Annotation: flagellar transcriptional regulator FlhC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 PF05280: FlhC" amino acids 2 to 174 (173 residues), 292.1 bits, see alignment E=6.5e-92

Best Hits

Swiss-Prot: 94% identical to FLHC_SERMA: Flagellar transcriptional regulator FlhC (flhC) from Serratia marcescens

KEGG orthology group: K02402, flagellar transcriptional activator FlhC (inferred from 100% identity to spe:Spro_2988)

Predicted SEED Role

"Flagellar transcriptional activator FlhC" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (194 amino acids)

>IAI46_16055 flagellar transcriptional regulator FlhC (Serratia liquefaciens MT49)
MMAEKSIVQEAKDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPF
STDWFMTWEQNIHSSMFYNAYSFLMKSGHCTGVEAVIKAYRLYLEQCPHQPGEPPLLALT
RAWTLVRFVDSGMLQLSACNCCGGTFITHAHQPLNNFVCSLCQPPSRAVKRRKLSPQLAD
IIPQLLDEQVKRAI