Protein Info for IAI46_15850 in Serratia liquefaciens MT49

Annotation: flagellar assembly protein FliH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 PF02108: FliH" amino acids 102 to 225 (124 residues), 129 bits, see alignment E=5.7e-42

Best Hits

Swiss-Prot: 70% identical to FLIH_ECOLI: Flagellar assembly protein FliH (fliH) from Escherichia coli (strain K12)

KEGG orthology group: K02411, flagellar assembly protein FliH (inferred from 92% identity to spe:Spro_2949)

Predicted SEED Role

"Flagellar assembly protein FliH" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (234 amino acids)

>IAI46_15850 flagellar assembly protein FliH (Serratia liquefaciens MT49)
MSDRINTLPWQPWSLNDLNEPKPALDPLPLPVEITDGAPLDDSLVREQQLTQLRLQAEQQ
GQQLGYADGQQKGYDAGFQAGMEEGRQQGLLEAQQQQQPLTAHWQHLVTEFQHTLDALDS
VIASRLMQLALTAAKQVLGQPPVCDGTALLAQIQQLIQQEPMFSGKPQLRVHPDDYQRIE
QQLGATLSLHGWRLLADGQLHPGGCKVSADEGDLDASLATRWHELCRLAAPGDV