Protein Info for IAI46_15595 in Serratia liquefaciens MT49

Annotation: winged helix-turn-helix domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 transmembrane" amino acids 184 to 204 (21 residues), see Phobius details PF00486: Trans_reg_C" amino acids 21 to 91 (71 residues), 58.1 bits, see alignment E=3.9e-20

Best Hits

KEGG orthology group: None (inferred from 86% identity to spe:Spro_2897)

Predicted SEED Role

"transcriptional regulator, CadC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (299 amino acids)

>IAI46_15595 winged helix-turn-helix domain-containing protein (Serratia liquefaciens MT49)
MNLDKRIKIRNLDVLTPSREKFRLRWKEYQILSLLVARSPELVSRTEIIENIWKGTYCSD
STINQTIKSIRQKIGDAEHTLIRTIPRLGYKVENKAVFHFISEEEEYADDEIWGGDTDDN
KDIQAELSESNDKPDETLAEEIELNDENMAPVDPPVVPVTLKNTSIRKKIPASAGFFSVP
AVRVVKYLSVFVSLLIISHFSYVLGNQTRPPIINDIQNNTRVVLTLTLNNARTNSPQTLL
CLYQGESLEQATIECVDPKQGRLKQPVKYETSDAQGTGKINLILPNKTMEYQVAYDVKN